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This revision corresponds to PyRosetta v2. The main problem I had seems specific to Python 2. I include all the steps I took for completeness and add some comments for those new to Linux. Everything below was tested on Linux Mint However, since Mint closely follows Ubuntu, the solution may also work on Ubuntu Mint 13 comes with Python 2.
As a general rule of thumb, never overwrite your the default Python installation on your Linux OS as this can mess up your package manager which can mess up your OS is this true for Mac OS X? The steps below are specific to Debian distributions e. For RHEL distributions e. CentOS, the steps are similar but 'yum' is used instead of 'apt-get' and some packages are named differently e. I believe libbz2-dev is bzip2-devel in RHEL distributions.
This list may not be sufficient and necessary for building Python for PyRosetta. Maybe someone can correct me here:. If this command fails, remove the failed package s from the apt-get command line and try again. Take note of those that failed though in case they are needed. You may need libreadline5-dev instead of libreadline-gplv2-dev.
Otherwise, it is bit. Download and build Python 2. If you are using Linux Mint 13 Maya or Ubuntu This may be true for other distributions as well. In this case, you will need the following variable to be set in your environment:. This ensures that we leave our existing installation, which may be crucial to the OS, safe.
PyRosetta needs the --enable-shared option which builds shared libaries and the --enable-unicode option. If someone knows, please answer below. Check the man page 'man ld' to check how this file is structured. It may be enough to add this path on a new line in the file: I may edit some of the above based on some information Sergey is telling me.
The process may be made simpler by scripts in the repository. Also, it is possible that I did not need to install Python 2. This may have been sufficient to get PyRosetta running without going through all the steps above. However, this package could not be found. It looks like the libpython2.
Mint 13 is compatible with the Ubuntu This is Great Shane, thank you for putting this together! I have added link to this post to our PyRosetta website. A few notes that might be helpful:. This will also allow you to not disturb system wide install of python in case you want to preserve it. Log in or register to post comments. Install basic development packages This list may not be sufficient and necessary for building Python for PyRosetta. Maybe someone can correct me here: Determine whether your Linux kernel is bit or bit Run this command: In this case, you will need the following variable to be set in your environment: Configure the dynamic loader to find the Python 2.
A few notes that might be helpful: